Transcript: lnc-PGM5-2:11

Basic information

LNCipedia transcript ID: lnc-PGM5-2:11 
LNCipedia gene ID: lnc-PGM5-2
Location (hg19): chr9:70942020-70945210
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 296 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016605; NONHSAT131736
Alternative gene names: XLOC_007390; linc-PGM5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.2161 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:11 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L3-2:5
3.1 lnc-FOXD4L3-2:5
4.0 lnc-FOXD4L3-2:5
4.1 lnc-FOXD4L3-2:5
5.0 lnc-FOXD4L3-2:5
5.1 lnc-ZNF658-21:10
5.2 lnc-PGM5-2:11