Transcript: lnc-PGPEP1L-10:3

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-10:3 
LNCipedia gene ID: lnc-PGPEP1L-10
Location (hg19): chr15:98539314-98559824
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 276 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024213; NONHSAT050751
Alternative gene names: XLOC_011603; linc-RGMA-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-10:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-82I10.1.1-3:3
3.1 lnc-RP11-82I10.1.1-4:3
4.0 lnc-RP11-82I10.1.1-4:3
4.1 lnc-RP11-82I10.1.1-4:3
5.0 lnc-RP11-82I10.1.1-4:3
5.1 lnc-CIB1-79:3
5.2 lnc-PGPEP1L-10:3