Transcript: lnc-PGPEP1L-10:4

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-10:4 
LNCipedia gene ID: lnc-PGPEP1L-10
Location (hg19): chr15:98538125-98538931
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00024212
Alternative gene names: XLOC_011603; linc-RGMA-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.763 non-coding 
CPAT coding probability 17.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-10:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-82I10.1.1-3:4
3.1 lnc-RP11-82I10.1.1-4:4
4.0 lnc-RP11-82I10.1.1-4:4
4.1 lnc-RP11-82I10.1.1-4:4
5.0 lnc-RP11-82I10.1.1-4:4
5.1 lnc-CIB1-79:4
5.2 lnc-PGPEP1L-10:4