Transcript: lnc-PGPEP1L-12:1

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-12:1 
LNCipedia gene ID: lnc-PGPEP1L-12
Ensembl Gene ID: ENSG00000259582
Ensembl Transcript ID: ENST00000559363
Location (hg19): chr15:98096514-98103932
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1401 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559363.2; RP11-461F11.3-001; OTTHUMT00000416593.2; NONHSAT050739
Alternative gene names: ENSG00000259582.2; RP11-461F11.3; OTTHUMG00000172043.2; ENSG00000259582.3; AC026523.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.2249 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-82I10.1.1-5:1
4.0 lnc-RP11-82I10.1.1-5:1
4.1 lnc-RP11-82I10.1.1-5:1
5.0 lnc-RP11-82I10.1.1-5:1
5.1 lnc-CIB1-77:1
5.2 lnc-PGPEP1L-12:1