Transcript: lnc-PGPEP1L-18:1

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-18:1 
LNCipedia gene ID: lnc-PGPEP1L-18
Location (hg19): chr15:97725803-97767418
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 371 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023815; NONHSAT050726
Alternative gene names: XLOC_011595; linc-RGMA-16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.4024 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-82I10.1.1-8:1
3.1 lnc-RP11-82I10.1.1-12:1
4.0 lnc-RP11-82I10.1.1-12:1
4.1 lnc-RP11-82I10.1.1-12:1
5.0 lnc-RP11-82I10.1.1-12:1
5.1 lnc-CIB1-72:1
5.2 lnc-PGPEP1L-18:1