Transcript: lnc-PGPEP1L-8:3

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-8:3 
LNCipedia gene ID: lnc-PGPEP1L-8
Ensembl Gene ID: ENSG00000259320
Ensembl Transcript ID: ENST00000559643
Location (hg19): chr15:98665792-98674836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559643.1; RP11-183E24.2-001; OTTHUMT00000415589.1; NONHSAT050771
Alternative gene names: ENSG00000259320.1; RP11-183E24.2; OTTHUMG00000171878.1; AC022523.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9737 non-coding 
CPAT coding probability 14.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-82I10.1.1-8:1
4.0 lnc-RP11-82I10.1.1-8:1
4.1 lnc-RP11-82I10.1.1-8:1
5.0 lnc-RP11-82I10.1.1-8:1
5.1 lnc-CIB1-80:3
5.2 lnc-PGPEP1L-8:3