Transcript: lnc-PGRMC1-1:1

Basic information

LNCipedia transcript ID: lnc-PGRMC1-1:1 
LNCipedia gene ID: lnc-PGRMC1-1
Ensembl Gene ID: ENSG00000230392
Ensembl Transcript ID: ENST00000428222
Location (hg19): chrX:118425492-118469573
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2907 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017009; ENST00000428222; ENST00000428222.1; RP5-1139I1.1-001; OTTHUMT00000058027.1; NONHSAT138311
Alternative gene names: XLOC_008053; linc-SLC25A43; ENSG00000230392; RP5-1139I1.1; ENSG00000230392.1; OTTHUMG00000022271.1; AC004835.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.6345 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PGRMC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PGRMC1-1:1
3.1 lnc-PGRMC1-1:1
4.0 lnc-PGRMC1-1:1
4.1 lnc-PGRMC1-1:1
5.0 lnc-PGRMC1-1:1
5.1 lnc-TEX13C-83:1
5.2 lnc-PGRMC1-1:1