Transcript: lnc-PHACTR1-1:1

Basic information

LNCipedia transcript ID: lnc-PHACTR1-1:1 
LNCipedia gene ID: lnc-PHACTR1-1
Location (hg19): chr6:13328900-13330028
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00011697
Alternative gene names: XLOC_005176; linc-SIRT5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 46.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PHACTR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHACTR1-1:1
3.1 lnc-PHACTR1-1:1
4.0 lnc-PHACTR1-1:1
4.1 lnc-PHACTR1-1:1
5.0 lnc-PHACTR1-1:1
5.1 lnc-PRPF4B-141:6
5.2 lnc-PHACTR1-1:1