Transcript: lnc-PHACTR2-1:2

Basic information

LNCipedia transcript ID: lnc-PHACTR2-1:2 
LNCipedia gene ID: lnc-PHACTR2-1
Location (hg19): chr6:143845454-143845738
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr6_10628_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.08 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHACTR2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHACTR2-1:2
4.0 lnc-PHACTR2-1:2
4.1 lnc-PHACTR2-1:2
5.0 lnc-PHACTR2-1:2
5.1 lnc-ADGRG6-17:1
5.2 lnc-PHACTR2-1:2