Transcript: lnc-PHACTR3-1:1

Basic information

LNCipedia transcript ID: lnc-PHACTR3-1:1 
LNCipedia gene ID: lnc-PHACTR3-1
Ensembl Gene ID: ENSG00000227282
Ensembl Transcript ID: ENST00000443747
Location (hg19): chr20:58090246-58091094
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027969; ENST00000443747; ENST00000443747.1; RP11-164D18.2-001; OTTHUMT00000268117.1; NONHSAT080621
Alternative gene names: XLOC_013589; linc-PHACTR3; ENSG00000227282; RP11-164D18.2; ENSG00000227282.1; OTTHUMG00000137386.1; AL389889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.0019 non-coding 
CPAT coding probability 9.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHACTR3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHACTR3-1:1
3.1 lnc-PHACTR3-1:1
4.0 lnc-PHACTR3-1:1
4.1 lnc-PHACTR3-1:1
5.0 lnc-PHACTR3-1:1
5.1 lnc-GNAS-10:1
5.2 lnc-PHACTR3-1:1