Transcript: lnc-PHACTR3-3:1

Basic information

LNCipedia transcript ID: lnc-PHACTR3-3:1 
LNCipedia gene ID: lnc-PHACTR3-3
Location (hg19): chr20:58096337-58109790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1699 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002ybk_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.4205 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHACTR3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHACTR3-3:1
4.0 lnc-PHACTR3-3:1
4.1 lnc-PHACTR3-3:1
5.0 lnc-PHACTR3-3:1
5.1 lnc-GNAS-11:1
5.2 lnc-PHACTR3-3:1