Transcript: lnc-PHB2-4:1

Basic information

LNCipedia transcript ID: lnc-PHB2-4:1 
LNCipedia gene ID: lnc-PHB2-4
Ensembl Gene ID: ENSG00000272173
Ensembl Transcript ID: ENST00000607421
Location (hg19): chr12:7052671-7053767
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1097 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607421.1
Alternative gene names: ENSG00000272173.1; U47924.31; U47924.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.7867 non-coding 
CPAT coding probability 29.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHB2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHB2-4:1
4.0 lnc-PHB2-4:1
4.1 lnc-PHB2-4:1
5.0 lnc-PHB2-4:1
5.1 lnc-CHD4-34:3
5.2 lnc-PHB2-4:1