Transcript: lnc-PHF2-1:1

Basic information

LNCipedia transcript ID: lnc-PHF2-1:1 
LNCipedia gene ID: lnc-PHF2-1
Location (hg19): chr9:96301210-96322860
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 365 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434312.1; RP11-30L4.5-001; OTTHUMT00000053149.1; NONHSAT133275
Alternative gene names: ENSG00000234543.1; RP11-30L4.5; OTTHUMG00000020250.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.4603 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHF2-1:1
4.0 lnc-PHF2-1:1
4.1 lnc-PHF2-1:1
5.0 lnc-PHF2-1:1
5.1 lnc-SECISBP2-68:1
5.2 lnc-PHF2-1:1