Transcript: lnc-PHF21A-3:1

Basic information

LNCipedia transcript ID: lnc-PHF21A-3:1 
LNCipedia gene ID: lnc-PHF21A-3
Location (hg19): chr11:46264216-46264934
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000005514.1|ENCT00000077611.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.6765 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF21A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PHF21A-3:1
5.0 lnc-PHF21A-3:1
5.1 lnc-RAG2-69:1
5.2 lnc-PHF21A-3:1