Transcript: lnc-PHF3-1:1

Basic information

LNCipedia transcript ID: lnc-PHF3-1:1 
LNCipedia gene ID: lnc-PHF3-1
Ensembl Gene ID: ENSG00000236345
Ensembl Transcript ID: ENST00000429530
Location (hg19): chr6:64516729-64532535
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1454 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429530.1; RP11-59D5__B.2-001; OTTHUMT00000041090.1; NONHSAT113356
Alternative gene names: ENSG00000236345.1; RP11-59D5__B.2; OTTHUMG00000014954.1; AL354719.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.5914 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHF3-1:1
4.0 lnc-PHF3-1:1
4.1 lnc-PHF3-1:1
5.0 lnc-PHF3-1:1
5.1 lnc-HCRTR2-42:9
5.2 lnc-PHF3-1:1