Transcript: lnc-PHGDH-2:1

Basic information

LNCipedia transcript ID: lnc-PHGDH-2:1 
LNCipedia gene ID: lnc-PHGDH-2
Location (hg19): chr1:120388521-120389383
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001130; NONHSAT005578
Alternative gene names: XLOC_000371; linc-FAM72B-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8742 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHGDH-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHGDH-1:1
3.1 lnc-PHGDH-2:1
4.0 lnc-PHGDH-2:1
4.1 lnc-PHGDH-2:1
5.0 lnc-PHGDH-2:1
5.1 lnc-HSD3B1-3:1
5.2 lnc-PHGDH-2:1