Transcript: lnc-PHGDH-4:4

Basic information

LNCipedia transcript ID: lnc-PHGDH-4:4 
LNCipedia gene ID: lnc-PHGDH-4
Location (hg19): chr1:120612586-120638073
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001131; NONHSAT005586
Alternative gene names: XLOC_000373; linc-FAM72B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7019 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHGDH-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72B-2:1
3.1 lnc-FAM72B-4:1
4.0 lnc-FAM72B-4:1
4.1 lnc-FAM72B-4:1
5.0 lnc-FAM72B-4:1
5.1 lnc-HSD3B1-5:1
5.2 lnc-PHGDH-4:4