Transcript: lnc-PHIP-3:5

Basic information

LNCipedia transcript ID: lnc-PHIP-3:5 
LNCipedia gene ID: lnc-PHIP-3
Location (hg19): chr6:79575578-79577207
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1630 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000088994.1|FTMT22200005451.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.5652 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHIP-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PHIP-3:5
5.0 lnc-PHIP-3:5
5.1 lnc-CEP162-49:5
5.2 lnc-PHIP-3:5