Transcript: lnc-PHLPP1-1:4

Basic information

LNCipedia transcript ID: lnc-PHLPP1-1:4 
LNCipedia gene ID: lnc-PHLPP1-1
Location (hg19): chr18:60249038-60253962
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2376 bp
Exons: 2
Sources: Biogazelle lncRNA chip; NONCODE v4
Alternative transcript names: ENST00000505963; NONHSAT059645
Alternative gene names: ENSG00000249546


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.379 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHLPP1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC2-1:1
3.1 lnc-ZCCHC2-1:1
4.0 lnc-ZCCHC2-1:1
4.1 lnc-ZCCHC2-1:1
5.0 lnc-ZCCHC2-1:1
5.1 lnc-WDR7-73:1
5.2 lnc-PHLPP1-1:4