Transcript: lnc-PHOX2A-3:1

Basic information

LNCipedia transcript ID: lnc-PHOX2A-3:1 
LNCipedia gene ID: lnc-PHOX2A-3
Ensembl Gene ID: ENSG00000204971
Ensembl Transcript ID: ENST00000378140
Location (hg19): chr11:71874366-71920285
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 477 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000378140.3; RP11-807H22.7-001; OTTHUMT00000396768.1; NONHSAT022760
Alternative gene names: ENSG00000204971.3; RP11-807H22.7; OTTHUMG00000167874.1; AP000812.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5417 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHOX2A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHOX2A-1:1
4.0 lnc-PHOX2A-1:1
4.1 lnc-PHOX2A-1:1
5.0 lnc-PHOX2A-1:1
5.1 lnc-UCP3-53:1
5.2 lnc-PHOX2A-3:1