Transcript: lnc-PHOX2B-1:1

Basic information

LNCipedia transcript ID: lnc-PHOX2B-1:1 
LNCipedia gene ID: lnc-PHOX2B-1
Ensembl Gene ID: ENSG00000249216
Ensembl Transcript ID: ENST00000506475
Location (hg19): chr4:41690875-41694814
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506475.1; RP11-227F19.5-001; OTTHUMT00000361475.1; NONHSAT096166
Alternative gene names: ENSG00000249216.1; RP11-227F19.5; OTTHUMG00000160625.1; AC105389.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.9491 non-coding 
CPAT coding probability 8.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHOX2B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHOX2B-1:1
4.0 lnc-PHOX2B-1:1
4.1 lnc-PHOX2B-1:1
5.0 lnc-PHOX2B-1:1
5.1 lnc-GABRA4-26:4
5.2 lnc-PHOX2B-1:1