Transcript: lnc-PHOX2B-1:2

Basic information

LNCipedia transcript ID: lnc-PHOX2B-1:2 
LNCipedia gene ID: lnc-PHOX2B-1
Location (hg19): chr4:41688965-41695350
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2772 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT096165
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.7148 non-coding 
CPAT coding probability 4.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHOX2B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHOX2B-1:2
4.0 lnc-PHOX2B-1:2
4.1 lnc-PHOX2B-1:2
5.0 lnc-PHOX2B-1:2
5.1 lnc-GABRA4-26:3
5.2 lnc-PHOX2B-1:2