Transcript: lnc-PHTF2-1:2

Basic information

LNCipedia transcript ID: lnc-PHTF2-1:2 
LNCipedia gene ID: lnc-PHTF2-1
Ensembl Gene ID: ENSG00000232756
Ensembl Transcript ID: ENST00000454234
Location (hg19): chr7:77619734-77621940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1965 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012883; ENST00000454234.1; RP5-1185I7.1-001; OTTHUMT00000344344.1; NONHSAT121683
Alternative gene names: XLOC_006154; linc-GNAI1-2; ENSG00000232756.1; RP5-1185I7.1; OTTHUMG00000156495.1; AC004990.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.3928 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHTF2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHTF2-1:2
3.1 lnc-PHTF2-1:2
4.0 lnc-PHTF2-1:2
4.1 lnc-PHTF2-1:2
5.0 lnc-PHTF2-1:2
5.1 lnc-FKBP6-108:2
5.2 lnc-PHTF2-1:2