Transcript: lnc-PI16-1:2

Basic information

LNCipedia transcript ID: lnc-PI16-1:2 
LNCipedia gene ID: lnc-PI16-1
Location (hg19): chr6:36907863-36912451
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011299; ENST00000427609.1; RP1-90K10.4-001; OTTHUMT00000040379.1; NONHSAT112242
Alternative gene names: XLOC_005276; linc-PI16; ENSG00000232598.1; RP1-90K10.4; OTTHUMG00000014610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.2427 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PI16-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf89-1:1
3.1 lnc-C6orf89-1:1
4.0 lnc-C6orf89-1:1
4.1 lnc-C6orf89-1:1
5.0 lnc-C6orf89-1:1
5.1 lnc-PI16-1:1
5.2 lnc-PI16-1:2