Transcript: lnc-PI4KB-1:3

Basic information

LNCipedia transcript ID: lnc-PI4KB-1:3 
LNCipedia gene ID: lnc-PI4KB-1
Ensembl Gene ID: ENSG00000232671
Ensembl Transcript ID: ENST00000447795
RefSeq ID: NR_135595
Location (hg19): chr1:151252500-151254405
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 622 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000447795.3; NR_135595.1
Alternative gene names: ENSG00000232671.5; RP11-126K1.2; AL391069.2; LOC100507670


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.0914 non-coding 
CPAT coding probability 8.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PI4KB-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-126K1.2.1-1:3
4.1 lnc-RP11-126K1.2.1-1:3
5.0 lnc-RP11-126K1.2.1-1:3
5.1 lnc-SELENBP1-7:2
5.2 lnc-PI4KB-1:3