Transcript: lnc-PIGBOS1-1:7

Basic information

LNCipedia transcript ID: lnc-PIGBOS1-1:7 
LNCipedia gene ID: lnc-PIGBOS1-1
Location (hg19): chr15:55609382-55611243
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 866 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000436697; ENST00000436697.2; RP11-139H15.1-001; OTTHUMT00000419683.1; NONHSAT043987
Alternative gene names: ENSG00000225973; AC018926.1; ENSG00000225973.3; RP11-139H15.1; OTTHUMG00000172653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.0777 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.153846154
orfFrame6.682788086
seqAAMFRRLTFAQLLFATVLGIAGGVYIFQPVFEQYAKDQKELKEKMQLVQESEEKKS

In stringent set: no

Locus conservation

Locus conservation?
lnc-PIGBOS1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCPG1-1:1
3.1 lnc-CCPG1-1:3
4.0 lnc-RAB27A-1:7
4.1 lnc-RAB27A-1:7
5.0 lnc-RAB27A-1:7
5.1 lnc-DNAAF4-8:7
5.2 lnc-PIGBOS1-1:7