Transcript: lnc-PIGF-1:1

Basic information

LNCipedia transcript ID: lnc-PIGF-1:1 
LNCipedia gene ID: lnc-PIGF-1
Ensembl Gene ID: ENSG00000250116
Ensembl Transcript ID: ENST00000506009
RefSeq ID: NR_104182
Location (hg19): chr2:46795395-46807377
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1519 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506009.2; RP11-417F21.1-001; OTTHUMT00000380572.1; NR_104182.1
Alternative gene names: ENSG00000250116.2; RP11-417F21.1; OTTHUMG00000164842.1; AC018682.1; LOC100506142


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.3479 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGF-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGF-1:1
4.0 lnc-PIGF-1:1
4.1 lnc-PIGF-1:1
5.0 lnc-PIGF-1:1
5.1 lnc-ATP6V1E2-1:13
5.2 lnc-PIGF-1:1