Transcript: lnc-PIGF-3:2

Basic information

LNCipedia transcript ID: lnc-PIGF-3:2 
LNCipedia gene ID: lnc-PIGF-3
Location (hg19): chr2:46726369-46727364
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 837 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004244; NONHSAT070502
Alternative gene names: XLOC_002085; linc-SRBD1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -506.1985 non-coding 
CPAT coding probability 3.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGF-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIGF-2:2
3.1 lnc-PIGF-3:2
4.0 lnc-PIGF-3:2
4.1 lnc-PIGF-3:2
5.0 lnc-PIGF-3:2
5.1 lnc-MCFD2-4:2
5.2 lnc-PIGF-3:2