Transcript: lnc-PIGK-1:1

Basic information

LNCipedia transcript ID: lnc-PIGK-1:1 
LNCipedia gene ID: lnc-PIGK-1
Ensembl Gene ID: ENSG00000233099
Ensembl Transcript ID: ENST00000436206
Location (hg19): chr1:77811731-77815270
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 377 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436206.1; RP11-375A5.1-001; OTTHUMT00000095997.2; NONHSAT004027
Alternative gene names: ENSG00000233099.1; RP11-375A5.1; OTTHUMG00000039775.2; AC095030.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.0901 non-coding 
CPAT coding probability 16.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGK-1:1
4.0 lnc-PIGK-1:1
4.1 lnc-PIGK-1:1
5.0 lnc-PIGK-1:1
5.1 lnc-FUBP1-13:1
5.2 lnc-PIGK-1:1