Transcript: lnc-PIGM-1:1

Basic information

LNCipedia transcript ID: lnc-PIGM-1:1 
LNCipedia gene ID: lnc-PIGM-1
Location (hg19): chr1:159994743-159996584
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1842 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000562313.1; RP11-226L15.5-001; OTTHUMT00000431518.1; NONHSAT007037
Alternative gene names: ENSG00000260766.1; RP11-226L15.5; OTTHUMG00000176110.1; AL513302.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6561 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGM-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGM-1:1
4.0 lnc-PIGM-1:1
4.1 lnc-PIGM-1:1
5.0 lnc-PIGM-1:1
5.1 lnc-PIGM-1:1
5.2 lnc-PIGM-1:1