Transcript: lnc-PIGM-2:1

Basic information

LNCipedia transcript ID: lnc-PIGM-2:1 
LNCipedia gene ID: lnc-PIGM-2
Location (hg19): chr1:160010261-160012085
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 593 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000509700.1; RP11-226L15.4-001; OTTHUMT00000060641.1
Alternative gene names: ENSG00000250463.1; RP11-226L15.4; OTTHUMG00000024079.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 329.1035 coding 
CPAT coding probability 30.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PIGM-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGM-2:1
4.0 lnc-PIGM-2:1
4.1 lnc-PIGM-2:1
5.0 lnc-PIGM-2:1
5.1 lnc-PIGM-2:1
5.2 lnc-PIGM-2:1