Transcript: lnc-PIGU-1:3

Basic information

LNCipedia transcript ID: lnc-PIGU-1:3 
LNCipedia gene ID: lnc-PIGU-1
Location (hg19): chr20:33284722-33302432
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 519 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434040.1; RP11-346K17.4-001; OTTHUMT00000078805.1; NONHSAT079451
Alternative gene names: ENSG00000225065.1; RP11-346K17.4; OTTHUMG00000032308.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.6337 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGU-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCOA6-1:1
4.0 lnc-NCOA6-1:1
4.1 lnc-NCOA6-1:1
5.0 lnc-NCOA6-1:1
5.1 lnc-MMP24OS-15:2
5.2 lnc-PIGU-1:3