Transcript: lnc-PIK3R1-12:1

Basic information

LNCipedia transcript ID: lnc-PIK3R1-12:1 
LNCipedia gene ID: lnc-PIK3R1-12
Location (hg19): chr5:67124686-67143029
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10101 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2933_chr5:67124685-67143029_liver
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6299 non-coding 
CPAT coding probability 21.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIK3R1-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404L6.2.1-4:1
4.0 lnc-RP11-404L6.2.1-4:1
4.1 lnc-RP11-404L6.2.1-4:1
5.0 lnc-RP11-404L6.2.1-4:1
5.1 lnc-NLN-36:1
5.2 lnc-PIK3R1-12:1