Transcript: lnc-PIK3R6-1:2

Basic information

LNCipedia transcript ID: lnc-PIK3R6-1:2 
LNCipedia gene ID: lnc-PIK3R6-1
Location (hg19): chr17:8706041-8770994
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3288 bp
Exons: 21
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000399376; ENST00000399376.3; PIK3R6-202
Alternative gene names: ENSG00000174083; PIK3R6; ENSG00000174083.12; OTTHUMG00000132861.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3018.4964 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PIK3R6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFSD6L-1:3
3.1 lnc-MFSD6L-1:2
4.0 lnc-MFSD6L-1:2
4.1 lnc-MFSD6L-1:2
5.0 lnc-MFSD6L-1:2
5.1 lnc-PIK3R5-1:3
5.2 lnc-PIK3R6-1:2