Transcript: lnc-PIKFYVE-7:1

Basic information

LNCipedia transcript ID: lnc-PIKFYVE-7:1 
LNCipedia gene ID: lnc-PIKFYVE-7
Location (hg19): chr2:208929427-208941923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000046416.1|MICT00000206560.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.2606 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIKFYVE-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PIKFYVE-7:1
5.0 lnc-PIKFYVE-7:1
5.1 lnc-CPS1-27:2
5.2 lnc-PIKFYVE-7:1