Transcript: lnc-PIPOX-4:8

Basic information

LNCipedia transcript ID: lnc-PIPOX-4:8 
LNCipedia gene ID: lnc-PIPOX-4
Ensembl Gene ID: ENSG00000265845
Ensembl Transcript ID: ENST00000580782
RefSeq ID: NR_110803
Location (hg19): chr17:27253293-27271767
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 683 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000580782.1; RP11-20B24.5-001; OTTHUMT00000446750.1; NONHSAT052672; NR_110803.1
Alternative gene names: ENSG00000265845.1; RP11-20B24.5; OTTHUMG00000179499.1; ENSG00000265845.2; AC024267.4; LOC101927018


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7723 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIPOX-4:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERAL1-4:2
4.0 lnc-ERAL1-4:2
4.1 lnc-ERAL1-4:2
5.0 lnc-ERAL1-4:2
5.1 lnc-PIPOX-4:3
5.2 lnc-PIPOX-4:8