Transcript: lnc-PITRM1-7:8

Basic information

LNCipedia transcript ID: lnc-PITRM1-7:8 
LNCipedia gene ID: lnc-PITRM1-7
Location (hg19): chr10:2488946-2543585
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 687 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00018401
Alternative gene names: XLOC_008688; linc-ADARB2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.8318 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITRM1-7:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITRM1-7:8
3.1 lnc-PITRM1-7:8
4.0 lnc-PITRM1-7:8
4.1 lnc-PITRM1-7:8
5.0 lnc-PITRM1-7:8
5.1 lnc-KLF6-40:9
5.2 lnc-PITRM1-7:8