Transcript: lnc-PITRM1-7:9

Basic information

LNCipedia transcript ID: lnc-PITRM1-7:9 
LNCipedia gene ID: lnc-PITRM1-7
Ensembl Gene ID: ENSG00000234170
Ensembl Transcript ID: ENST00000414107
Location (hg19): chr10:2488447-2489546
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 756 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017899; ENST00000414107; ENST00000414107.1; RP11-446F3.2-001; OTTHUMT00000046442.1; NONHSAT010967; ENST00000414107.5
Alternative gene names: XLOC_008688; linc-ADARB2-5; ENSG00000234170; RP11-446F3.2; ENSG00000234170.1; OTTHUMG00000017549.1; ENSG00000234170.5; AC024908.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.1993 non-coding 
CPAT coding probability 8.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITRM1-7:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITRM1-7:10
3.1 lnc-PITRM1-7:9
4.0 lnc-PITRM1-7:9
4.1 lnc-PITRM1-7:9
5.0 lnc-PITRM1-7:9
5.1 lnc-KLF6-40:11
5.2 lnc-PITRM1-7:9