Transcript: lnc-PITX2-3:2

Basic information

LNCipedia transcript ID: lnc-PITX2-3:2 
LNCipedia gene ID: lnc-PITX2-3
Location (hg19): chr4:111334562-111334834
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 273 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr4_5372_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.5621 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITX2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-380D23.1.1-3:1
4.0 lnc-RP11-380D23.1.1-3:1
4.1 lnc-RP11-380D23.1.1-3:1
5.0 lnc-RP11-380D23.1.1-3:1
5.1 lnc-TIFA-10:1
5.2 lnc-PITX2-3:2