Transcript: lnc-PITX2-4:1

Basic information

LNCipedia transcript ID: lnc-PITX2-4:1 
LNCipedia gene ID: lnc-PITX2-4
Location (hg19): chr4:111923366-111935138
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 284 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008548; NONHSAT097827
Alternative gene names: XLOC_004045; linc-PITX2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.8074 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITX2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITX2-2:1
3.1 lnc-PITX2-2:1
4.0 lnc-PITX2-2:1
4.1 lnc-PITX2-2:1
5.0 lnc-PITX2-2:1
5.1 lnc-TIFA-6:1
5.2 lnc-PITX2-4:1