Transcript: lnc-PJA2-1:1

Basic information

LNCipedia transcript ID: lnc-PJA2-1:1 
LNCipedia gene ID: lnc-PJA2-1
Ensembl Gene ID: ENSG00000249476
Ensembl Transcript ID: ENST00000512693
Location (hg19): chr5:108572821-108662070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5471 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512693; ENST00000512693.1; CTD-2587M2.1-001; OTTHUMT00000370753.1; NONHSAT103135
Alternative gene names: ENSG00000249476; CTD-2587M2.1; ENSG00000249476.1; OTTHUMG00000162848.1; AC008467.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3879 non-coding 
CPAT coding probability 8.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PJA2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PJA2-1:1
3.1 lnc-PJA2-1:1
4.0 lnc-PJA2-1:1
4.1 lnc-PJA2-1:1
5.0 lnc-PJA2-1:1
5.1 lnc-LOX-149:1
5.2 lnc-PJA2-1:1