Transcript: lnc-PKD1L3-1:2

Basic information

LNCipedia transcript ID: lnc-PKD1L3-1:2 
LNCipedia gene ID: lnc-PKD1L3-1
Location (hg19): chr16:71952815-71959638
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 762 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567146.1; RP11-498D10.5-001; OTTHUMT00000434197.1; NONHSAT143532
Alternative gene names: ENSG00000261337.1; RP11-498D10.5; OTTHUMG00000176876.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.6073 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PKD1L3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF821-1:2
4.0 lnc-ZNF821-1:2
4.1 lnc-ZNF821-1:2
5.0 lnc-ZNF821-1:2
5.1 lnc-PHLPP2-8:2
5.2 lnc-PKD1L3-1:2