Transcript: lnc-PLCH1-1:1

Basic information

LNCipedia transcript ID: lnc-PLCH1-1:1 
LNCipedia gene ID: lnc-PLCH1-1
Location (hg19): chr3:155008018-155011564
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 873 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000489090; ENST00000489090.1; RP11-451G4.2-001; OTTHUMT00000351109.1; NONHSAT092830
Alternative gene names: ENSG00000240045; RP11-451G4.2; ENSG00000240045.1; OTTHUMG00000158471.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 221.1856 coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PLCH1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCH1-1:1
3.1 lnc-PLCH1-1:1
4.0 lnc-PLCH1-1:1
4.1 lnc-PLCH1-1:1
5.0 lnc-PLCH1-1:1
5.1 lnc-SHOX2-39:1
5.2 lnc-PLCH1-1:1