Transcript: lnc-PLEKHA8-3:2

Basic information

LNCipedia transcript ID: lnc-PLEKHA8-3:2 
LNCipedia gene ID: lnc-PLEKHA8-3
Ensembl Gene ID: ENSG00000227014
Ensembl Transcript ID: ENST00000419103
Location (hg19): chr7:30028216-30065276
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 618 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419103.1; AC007285.6-001; OTTHUMT00000327702.1; NONHSAT119843
Alternative gene names: ENSG00000227014.1; AC007285.6; OTTHUMG00000152760.1; ENSG00000227014.5; AC007285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.5577 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHA8-3:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLEKHA8-3:2
4.0 lnc-PLEKHA8-3:2
4.1 lnc-PLEKHA8-3:2
5.0 lnc-PLEKHA8-3:2
5.1 lnc-MTURN-5:4
5.2 lnc-PLEKHA8-3:2