Transcript: lnc-PLEKHG4B-1:2

Basic information

LNCipedia transcript ID: lnc-PLEKHG4B-1:2 
LNCipedia gene ID: lnc-PLEKHG4B-1
Location (hg19): chr5:54169-60005
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5837 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249430.1|FTMT22000000013.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 44.4013 non-coding 
CPAT coding probability 21.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PLEKHG4B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PLEKHG4B-1:2
5.0 lnc-PLEKHG4B-1:2
5.1 lnc-CARD6-411:2
5.2 lnc-PLEKHG4B-1:2