Transcript: lnc-PLEKHO2-2:1

Basic information

LNCipedia transcript ID: lnc-PLEKHO2-2:1 
LNCipedia gene ID: lnc-PLEKHO2-2
Location (hg19): chr15:65100372-65100715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 240 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023443; NONHSAT046691
Alternative gene names: XLOC_011288; linc-PLEKHO2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.4428 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHO2-2:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC069368.3.1-1:1
3.1 lnc-AC069368.3.1-1:1
4.0 lnc-AC069368.3.1-1:1
4.1 lnc-AC069368.3.1-1:1
5.0 lnc-AC069368.3.1-1:1
5.1 lnc-MAP2K1-26:1
5.2 lnc-PLEKHO2-2:1