Transcript: lnc-PLOD2-2:1

Basic information

LNCipedia transcript ID: lnc-PLOD2-2:1 
LNCipedia gene ID: lnc-PLOD2-2
Ensembl Gene ID: ENSG00000261051
Ensembl Transcript ID: ENST00000567714
Location (hg19): chr3:145777372-145779466
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2095 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567714.1; RP11-274H2.5-001; OTTHUMT00000431153.1; NONHSAT092546
Alternative gene names: ENSG00000261051.1; RP11-274H2.5; OTTHUMG00000175832.1; AC107021.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.4971 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLOD2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLOD2-2:1
4.0 lnc-PLOD2-2:1
4.1 lnc-PLOD2-2:1
5.0 lnc-PLOD2-2:1
5.1 lnc-PLSCR5-12:1
5.2 lnc-PLOD2-2:1