Transcript: lnc-PLSCR3-1:4

Basic information

LNCipedia transcript ID: lnc-PLSCR3-1:4 
LNCipedia gene ID: lnc-PLSCR3-1
Location (hg19): chr17:7297423-7307416
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 562 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000570569.1; C17orf61-PLSCR3-003; OTTHUMT00000440793.1
Alternative gene names: ENSG00000262481.1; C17orf61-PLSCR3; OTTHUMG00000178150.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 579.6514 coding 
CPAT coding probability 53.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PLSCR3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf61-1:3
4.0 lnc-PLSCR3-1:4
4.1 lnc-PLSCR3-1:4
5.0 lnc-PLSCR3-1:4
5.1 lnc-YBX2-7:5
5.2 lnc-PLSCR3-1:4