Transcript: lnc-PMEL-1:1

Basic information

LNCipedia transcript ID: lnc-PMEL-1:1 
LNCipedia gene ID: lnc-PMEL-1
Location (hg19): chr12:56347469-56347884
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 306 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554053.1; RP11-973D8.3-001; OTTHUMT00000409648.1; NONHSAT028722
Alternative gene names: ENSG00000258862.1; RP11-973D8.3; OTTHUMG00000170574.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -444.8528 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMEL-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMEL-1:1
4.0 lnc-PMEL-1:1
4.1 lnc-PMEL-1:1
5.0 lnc-PMEL-1:1
5.1 lnc-PMEL-1:1
5.2 lnc-PMEL-1:1