Transcript: lnc-PMP2-1:2

Basic information

LNCipedia transcript ID: lnc-PMP2-1:2 
LNCipedia gene ID: lnc-PMP2-1
Ensembl Gene ID: ENSG00000254027
Ensembl Transcript ID: ENST00000517670
Location (hg19): chr8:82192122-82192910
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 571 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517670.1; RP11-363E6.3-002; OTTHUMT00000379363.1; NONHSAT147646
Alternative gene names: ENSG00000254027.1; RP11-363E6.3; OTTHUMG00000164598.1; AC009902.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.1233 non-coding 
CPAT coding probability 10.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMP2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMP2-1:2
4.0 lnc-PMP2-1:2
4.1 lnc-PMP2-1:2
5.0 lnc-PMP2-1:2
5.1 lnc-CPA6-156:8
5.2 lnc-PMP2-1:2